boundMolecules: Accessor methods for 'boundMolecules' slot in...
In patrickCNMartin/ChIPanalyserDev: ChIPanalyser: Predicting Transcription Factor Binding Sites
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Extract or Access boundMolecules slot in
parameterOptions object.
Usage
1
boundMolecules(object)
Arguments
object
object is a parameterOptions object.
Details
Defaut value: 1000
When computing occupancy (computeOccupancy), a value for the
number of bound Molecules to DNA is needed.
This value can be updated and set in a
parameterOptions object.
If the number of molecules is unknown,it is possible to infer this value with
computeOptimal.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns boundMolecules slot in
parameterOptions object.
Author(s)
Patrick C.N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1
2
3
4
# Building parameterOptions object
OPP <- parameterOptions()
#Checking single value by slot accessor
boundMolecules(OPP)
patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Extract or Access boundMolecules slot in
parameterOptions object.
Usage
1 | boundMolecules(object)
|
Arguments
object |
|
Details
Defaut value: 1000
When computing occupancy (computeOccupancy), a value for the
number of bound Molecules to DNA is needed.
This value can be updated and set in a
parameterOptions object.
If the number of molecules is unknown,it is possible to infer this value with
computeOptimal.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns boundMolecules slot in
parameterOptions object.
Author(s)
Patrick C.N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1 2 3 4 | # Building parameterOptions object
OPP <- parameterOptions()
#Checking single value by slot accessor
boundMolecules(OPP)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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