get_vaf: Calculate VAF

In paularstrpo/GeTalleleR: A method for integrative analysis and visualization of DNA and RNA allele frequencies

Description

Calculate VAF

Usage

get_vaf(ref, alt)

Arguments

ref	A numeric vector with number of reference reads for a set of loci
alt	A numeric vector with numer of variant reads for a set of loci

Value

The Variant Allele Frequency of a locus given reference and altered (variant) reads for a given locus

Examples

alt <- sample(10:1000, 5)
ref <- sample(10:1000, 5)
vaf <- get_vaf(ref, alt)

paularstrpo/GeTalleleR documentation built on Aug. 8, 2020, 12:51 p.m.