OFPE: OFPE: On-Farm Precision Experiments data management and...

In paulhegedus/OFPE: On-Farm Precision Experiments (OFPE) Data Management and Analysis Tools

OFPE: On-Farm Precision Experiments data management and analysis tools

Description

The OFPE package contains tools for supporting the OFPE data framework developed at Montana State University. This package contains S3 and R6 objects for executing data management and analysis tasks, including; creating an OFPE formatted spatial database, importing on-farm and remotely sensed data, aggregating data from disparate sources, data analysis and optimization of inputs, simulationg of management outcomes, and generation of prescriptive application maps for optimized inputs.

Details

This package relies on a PostgreSQL database named 'OFPE'. The user is assumed to have downloaded PostgreSQL and PostGIS. This process is outlined on the OFPE Website https://paulhegedus.github.io/OFPE-Website/.

The package follows Google's R Style Guide which follows the Tidyverse Style Guide. However, there are a couple distinctions from Google's style guide. Rather than naming functions with 'BigCamelCase', they are named with 'smallCamelCase', while R6 classes are named with 'BigCamelCase' and assigned to 'smallCamelCase' objects. Anything besides a class object or function is in 'snake_case.'

General

General R6 Classes that spread over more than one step. DBCon, DatClass, ModClass, SimClass

General Function Files. removeTempFuns, analysisFuns, findUTMzone, legendMap, importFuns, noSpecialChar, plotFuns, rxFuns

Database Creation & Managements

See Vignette 1 for database management and updating examples. The classes and functions used in this step of the OFPE cycle are listed below.

OFPE database build and management R6 classes. BuildDB, ManageDB, ManageFarmers, ManageFarms, ManageFields

Data Import

See the Vignettes 2 for examples importing data from farms and Google Earth Engine. The classes and functions used in this step of the OFPE cycle are listed below.

The OFPE data import R6 classes. ImportOF, ImportGEE

The OFPE data import functions. setNAtoNaN, makeDBcolsText, convPolyToMulti, makeSpatialIndex, importNewDat, standardizeColNames, noMatch, tabExist, importDat, importMulti

Data Aggregation

See Vignette 3 for examples aggregating data from disparate sources. The classes and functions used in this step of the OFPE cycle are listed below. The OFPE data aggregation R6 classes. AggDat, AggGEE, AggInputs

Data Analysis and Simulation

See Vignette 4 for an example on analyzing collected data and simulating management outcomes. The classes and functions used in this step of the OFPE cycle are listed below.

The OFPE data analysis and simulation R6 classes. DatClass, EconDat, ModClass, SimClass, SimOP, RcppExports

The OFPE data analysis and simulation R6 functions. findBadParms, valPrep, uniqueFieldname, plotMaps, getColorRamp

Prescription Generation

See Vignette 5 for an example on creating an optimized site-specific variable rate input prescription. The classes and functions used in this step of the OFPE cycle are listed below.

The OFPE experiment and prescription generation R6 classes. RxClass, SimClass, ExpGen, RxGen

The OFPE experiment and prescription generation R6 functions. getRxGrid, makeTempBound, makeRXGrid, getFldBound, applyExpRates, getExpReps, trimExpReps, makeBaseRate, trimGrid, makeRx, uniqueFieldname, plotMaps, getColorRamp

See Also

https://sites.google.com/site/ofpeframework/

https://paulhegedus.github.io/OFPE-Website/

https://github.com/paulhegedus/OFPEDATA.git

https://google.github.io/styleguide/Rguide.html

https://style.tidyverse.org

paulhegedus/OFPE documentation built on Nov. 23, 2022, 5:09 a.m.