NEWS.md
In paulhibbing/AGread: Read Data Files from ActiGraph Monitors
AGread 1.3.0
Dependency on the binaryLogic package has been circumvented, as the latter
package was archived in April 2022.
Additionally, reintegration has been restructured with both of the
previously-implemented methods now available in a single reintegrate
function
Changes
- Removed dependency on
binaryLogic
- Updated the interface for reintegration
- Added header skip recognition in csv-reading-related functions
AGread 1.2.0
- Added reintegrate2
- Added a
parser = "dev" option for read_gt3x, which serves
as a wrapper and formatter around read.gt3x::read.gt3x
Changes
- Fixed bugs related to overload and argument classes
AGread 1.1.0
Changes
- Revised interpolation schemes where necessary to ensure
matching output between
read_gt3x and exported csv files
- Resolved type mismatch in declaration/definition for
IMU sensor parsing
- Incorporated idle sleep mode assessment
- Updated unit test cache
- Utilized pre-allocation to speed up code (#15, @muschellij2)
- Accounted for trailing zeroes in packets
- Fixed column name detection in
read_AG_counts
AGread 1.0.0
Summary
Version 1.0.0 features speedup via Rcpp in the read_gt3x
function. There is also increased reliance on S3 OOP
in the background code. The output is now successfully
tested for alignment with *RAW.csv and *-IMU.csv
output, having accounted for several issues noted below.
Changes
- Revised the flow of
parse_log_bin to handle packet sets
via S3
- Accounted for USB connections in
gt3x files
- Corrected the interpolation of over- or under-sampled
IMU packets
- Incorporated Rcpp to speed up
read_gt3x
- Deprecated
get_duration in favor of the equivalent
function in PAutilities
- Revised unit tests to ensure equivalence between various
reading methods (csv output vs gt3x output etc.)
- Updated example data
AGread 0.2.2
Summary
Resubmission of version 0.2.0
Changes
- The license has been changed from GPL-3 to MIT, to accommodate the
usage conditions of material derived from
https://github.com/actigraph/GT3X-File-Format.
AGread 0.2.1
Summary
Resubmission of version 0.2.0
Changes
-
LICENSE was updated in the submission of version 0.2.0, but the changes were
not documented. In this resubmission, DESCRIPTION has been updated accordingly.
Specifically, copyright ownership has been clarified, related to the use of
open source material from
https://github.com/actigraph/GT3X-File-Format, and contributors have been
listed from the same site. The license field of
DESCRIPTION has been changed to file LICENSE to prevent misrepresentation
of the package copyright.
-
Dependency reshape2 was removed to resolve a NOTE in CRAN checks for
r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, and
r-patched-solaris-x86.
-
Documentation was updated.
AGread 0.2.0
Summary
In this update, the key new feature is support for reading binary
.gt3x files. Other bugs have been solved related to time variables,
and particularly calculations in epoch lengths other than 1-s. The
major changes are noted below.
Changes
- Added support for reading binary .gt3x files
- Added reintegration function
- Expanded support for files with inclinometer columns, to allow un-coded or
dummy-coded data
- Added chunking as an option for reading RAW.csv files that are too large
and cause memory issues
- Added option to apply autocalibration with GGIR
- Added option to return raw (uncollapsed) data (#3, @srlamunion)
- Updated time stamp calculations and time zone specifications where needed
- Set up automated testing for continued development
AGread 0.1.2
Summary
Resubmission of original version
Changes
- Added a summary of what ActiGraph monitors measure
in DESCRIPTION
- Unwrapped examples from \dontrun{} where feasible
- Improved the documentation of classify_magnetometer()
- Exported AG_meta()
AGread 0.1.1
Summary
Resubmission of original version
Changes
- Added Vincent van Hees as contributor
- Added URL and BugReports fields to DESCRIPTION
AGread 0.1.0
Summary
- Initial package version
paulhibbing/AGread documentation built on Sept. 17, 2022, 2:37 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
AGread 1.3.0
Dependency on the binaryLogic package has been circumvented, as the latter
package was archived in April 2022.
Additionally, reintegration has been restructured with both of the
previously-implemented methods now available in a single reintegrate
function
Changes
- Removed dependency on
binaryLogic - Updated the interface for reintegration
- Added header skip recognition in csv-reading-related functions
AGread 1.2.0
- Added reintegrate2
- Added a
parser = "dev"option forread_gt3x, which serves as a wrapper and formatter aroundread.gt3x::read.gt3x
Changes
- Fixed bugs related to overload and argument classes
AGread 1.1.0
Changes
- Revised interpolation schemes where necessary to ensure
matching output between
read_gt3xand exported csv files - Resolved type mismatch in declaration/definition for IMU sensor parsing
- Incorporated idle sleep mode assessment
- Updated unit test cache
- Utilized pre-allocation to speed up code (#15, @muschellij2)
- Accounted for trailing zeroes in packets
- Fixed column name detection in
read_AG_counts
AGread 1.0.0
Summary
Version 1.0.0 features speedup via Rcpp in the read_gt3x
function. There is also increased reliance on S3 OOP
in the background code. The output is now successfully
tested for alignment with *RAW.csv and *-IMU.csv
output, having accounted for several issues noted below.
Changes
- Revised the flow of
parse_log_binto handle packet sets via S3 - Accounted for USB connections in
gt3xfiles - Corrected the interpolation of over- or under-sampled IMU packets
- Incorporated Rcpp to speed up
read_gt3x - Deprecated
get_durationin favor of the equivalent function in PAutilities - Revised unit tests to ensure equivalence between various reading methods (csv output vs gt3x output etc.)
- Updated example data
AGread 0.2.2
Summary
Resubmission of version 0.2.0
Changes
- The license has been changed from GPL-3 to MIT, to accommodate the usage conditions of material derived from https://github.com/actigraph/GT3X-File-Format.
AGread 0.2.1
Summary
Resubmission of version 0.2.0
Changes
-
LICENSE was updated in the submission of version 0.2.0, but the changes were not documented. In this resubmission, DESCRIPTION has been updated accordingly. Specifically, copyright ownership has been clarified, related to the use of open source material from https://github.com/actigraph/GT3X-File-Format, and contributors have been listed from the same site. The license field of DESCRIPTION has been changed to
file LICENSEto prevent misrepresentation of the package copyright. -
Dependency
reshape2was removed to resolve a NOTE in CRAN checks for r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, and r-patched-solaris-x86. -
Documentation was updated.
AGread 0.2.0
Summary
In this update, the key new feature is support for reading binary .gt3x files. Other bugs have been solved related to time variables, and particularly calculations in epoch lengths other than 1-s. The major changes are noted below.
Changes
- Added support for reading binary .gt3x files
- Added reintegration function
- Expanded support for files with inclinometer columns, to allow un-coded or dummy-coded data
- Added chunking as an option for reading RAW.csv files that are too large and cause memory issues
- Added option to apply autocalibration with GGIR
- Added option to return raw (uncollapsed) data (#3, @srlamunion)
- Updated time stamp calculations and time zone specifications where needed
- Set up automated testing for continued development
AGread 0.1.2
Summary
Resubmission of original version
Changes
- Added a summary of what ActiGraph monitors measure in DESCRIPTION
- Unwrapped examples from \dontrun{} where feasible
- Improved the documentation of classify_magnetometer()
- Exported AG_meta()
AGread 0.1.1
Summary
Resubmission of original version
Changes
- Added Vincent van Hees as contributor
- Added URL and BugReports fields to DESCRIPTION
AGread 0.1.0
Summary
- Initial package version
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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