manuscript_code/README.md

In paulhibbing/SBprofiles: Learn about and use sedentary behavior profiles

What to expect here

This is the part of SBprofiles where you will find the R code I used when writing our manuscript. This is not intended to help you implement the profiles, just to understand how they were developed. For usage help, please see the PBpatterns package and, in particular, the associated vignette in that package.

NOTE: If you plan to replicate this code, you will need to make sure you have several packages installed. The following code should cover it, but feel free to submit an issue if you run into problems.

packages <- c(
  "beepr", "caret", "cluster", "data.table", "DescTools", "e1071", 
  "factoextra", "ggplot2", "magrittr", "PAutilities", "PhysicalActivity", 
  "randomForest", "remotes", "reshape2", "rstudioapi", "rvest", 
  "SASxport", "svDialogs", "tree", "xml2"
)

lapply(
  packages,
  function(x) if (!x %in% installed.packages()) install.packages(x)
)

if (!"tree" %in% installed.packages()) {
  remotes::install_version("tree", "1.0-39") ## Older R can only install old version
}

if (packageVersion("DescTools") < "0.99.32") {
    install.packages("DescTools") ## Requires a newer version of DescTools
}

## Need development versions of two packages:
remotes::install_github("paulhibbing/PAutilities", dependencies = FALSE)
remotes::install_github("SciViews/svDialogs", dependencies = FALSE)

paulhibbing/SBprofiles documentation built on June 16, 2022, 3:31 a.m.