NEWS.md

In paulklemm/trapdiff: Differential Gene Expression for bacTRAP/riboTRAP data based on DESeq2

trapdiff 0.3.3

• Fix rendering error by removing knit_root_dir from rmarkdown::render

trapdiff 0.3.3

• Remove normalization analysis by using "normalization": "none"

trapdiff 0.3.2

• Use DESeq2 normalized counts for ratio comparison
• Export ratio t-test and normalized counts

trapdiff 0.3.1

• Added a NEWS.md file to track changes to the package.
• Added filter_regex options that allows to remove genes by their name
• Added a library size vs size factor debug plot that allows to assess problems with library size and size factors not correlating properly
• The interactive plot as part of the trapdiff standard output displays CPMs instead of TPMs and is filtered for all DE genes, no matter the comparison
• Export CPMs

paulklemm/trapdiff documentation built on Nov. 12, 2022, 12:12 a.m.