concavex: concavex: A package for Bayesian dose-response modeling

In paulmanser/concavex: Concavex Bayesian Dose-Response Modeling

Description

concavex is an R package for fitting dose response curves. It conceptually borrows from the MCPMod approach to dose response curve fitting and only requires point estimates of effects and their standard errors at tested doses. Model fitting uses a fully Bayesian approach, and the concavex package is largely a wrapper for easily implementing and generating outputs with JAGS and the rjags package.

Functions

• ccvx_build_jags Build JAGS code for 3-parameter model

• ccvx5_build_jags Build JAGS code for 5-parameter model

• ccvx_fit Fit concavex model with JAGS Gibbs Sampler

• ccvx_plot_fit Plot fitted model vs data

• ccvx_hist_post Plot histograms of parameter posteriors

• ccvx_risk_profile Plot risk profiles

• ccvx_ddcp_plot Plot DDCP Phase 3 risks

• available_docs List available supporting documentation

• open_doc Open .pdf doc files listed in available_docs

Examples

Open User Guide for examples:

## Not run:

open_doc("User Guide")

## End (Not run)

See Also

Link to eventual concavex paper

Other Bayesian propaganda

paulmanser/concavex documentation built on May 5, 2019, 5:53 p.m.