heatmap_granges: R function to create a genom-wide heatmap for one meta column...

In pawel125/omicsTools: Set of classes, codes and scripts which I use for Omics data analysis

R function to create a genom-wide heatmap for one meta column for a list of GRanges

Description

R function to create a genom-wide heatmap for one meta column for a list of GRanges

Usage

heatmap_granges(
  granges,
  meta_field,
  row_groups = NULL,
  keep_sites_present_in = floor(0.8 * length(granges)),
  color_breaks = c(0, 2, 6),
  colors = c("dodgerblue3", "white", "firebrick3"),
  window_width = 1e+06,
  upper_limit = 6,
  cluster_rows = FALSE,
  show_row_names = TRUE,
  show_column_names = FALSE,
  use_raster = TRUE,
  cluster_columns = FALSE,
  border = TRUE,
  legend_params = NULL,
  ...
)

Arguments

granges	.
meta_field	.
row_groups	.
keep_sites_present_in	.
color_breaks	.
colors	.
window_width	.
upper_limit	.
cluster_rows	.
show_row_names	.
show_column_names	.
use_raster	.
cluster_columns	.
border	.
legend_params	.
...

Value

ComplexHeatmap heatmap

Examples

.

pawel125/omicsTools documentation built on Jan. 30, 2024, 6:54 p.m.