zooplankton_sog_axis_names: Zooplankton anomalies in the Strait of Georgia - long names...

In pbs-assess/PACea: An R package of Pacific ecosystem information to help facilitate an ecosystem approach to fisheries management

Zooplankton anomalies in the Strait of Georgia – long names for y-axis labels

Description

For automated plotting of columns of 'zooplankton_sog', 'zooplankton_sog_axis_names' contains expressions that correctly format to give the y-axis label. Gets automatically used by 'plot.zooplankton_index()', which gets automatically called by 'plot(zooplankton_sog)'. Should not really be needed by user. To see the expressions used for the axis names, type 'zooplankton_sog_axis_names$axis_name'. Then to adapt one, find the appropriate one and adapt that as necessary for 'ylab', see examples and zooplankton vignette.

Usage

zooplankton_sog_axis_names

Format

A tibble with columns:

species_group_name:

the available values for 'species_group_name', as given by the columns of 'zooplankton_sog' from 'total_biomass' onwards

axis_name :

an expression to give a correct y label for the plots (not just the 'species_group_name' shorthand), including getting the units (with superscripts) correct

in_perry_fig_s1:

logical whether or not the species group is in the 20 figures shown in Figures S1 of Perry et al. (2021); see the zooplankton vignette.

Author(s)

Andrew Edwards

Source

Created, based on Kelly Young's descriptions, in 'data-raw/zooplankton/zooplankton.R'

Examples

## Not run: 
# Not really needed by user, gets used to automate the y-axis name, eg:
plot(zooplankton_sog, species_group = "cladocera")
# To see them all:
zooplankton_sog_axis_names$axis_name
# Then adapt the relevant one and, enclosing it in `expression()`, use as an
#  argument for `ylab` when making your plot. For example, cladocera one is:
# paste(plain(Cladocera) * " " * plain(anomaly) * ", " * log[10] *
     " " * g * " " * m^-2)
# Can manually adapt that to do:
plot(zooplankton_sog, species_group = "cladocera",
  ylab = expression(plain(Anomaly) * " " * plain(of) * " " * plain(Cladocera) * ", " * log[10] *
     " " * g * " " * m^-2))

## End(Not run)

pbs-assess/PACea documentation built on April 17, 2025, 11:36 p.m.