plot_age_fits_mcmc: Plot MCMC age fits for an iSCAM model

In pbs-assess/gfiscamutils: Provide functions for iSCAM models

Plot MCMC age fits for an iSCAM model

Description

Plot MCMC age fits for an iSCAM model

Usage

plot_age_fits_mcmc(
  model,
  gear = 1,
  yrs = NULL,
  comp_color = "black",
  comp_width = 0.5,
  comp_alpha = 0.5,
  ci_linetype = c("dotted", "solid", "dashed", "dotdash", "longdash", "twodash"),
  ci_color = "red",
  ci_alpha = 0.3,
  text_title_size = 12,
  text_title_inc_mdl_nm = FALSE,
  angle_x_labels = FALSE,
  show_sample_size_f_only = TRUE,
  sample_size_x = 17,
  sample_size_y = 0.2
)

Arguments

model	An iscam model object (class mdl_cls)
gear	The number of the gear to plot
yrs	A vector of years to include in the plot. If the maximum extends past the range of years in the data, the maximum in the data will be used. If NULL, all years will be included
comp_color	Color for the age comp data lines and points
comp_width	Age comp bar widths
comp_alpha	Age comp bar alpha value (0-1)
ci_linetype	See linetype in ggplot2. Only used if ci_type is "line" or "both"
ci_color	Color for the lines or ribbon for the credible intervals
ci_alpha	Opacity between 0 and 1 for the credible intervals ribbons. Only used if ci_type is "ribbon" or "both"
text_title_size	Size of text for the axis titles
text_title_inc_mdl_nm	Logical. If TRUE, make the model name the main title and the gear the subtitle. If FALSE, do not show the model name, and make the gear the main title (if text_title_size is NULL, no title will be shown)
angle_x_labels	If TRUE put 45 degree angle on x-axis tick labels
show_sample_size_f_only	If TRUE, show the sample size in the female panels only. If FALSE, show the sample size in both male and female panels. Included for cases where the sample size is shared or repeated for both sexes.
sample_size_x	The x value (age) to place the sample size label
sample_size_y	The y value (0-1) to place the sample size label

Value

A ggplot2::ggplot() object

See Also

Other Age plotting functions: plot_age_fits_mpd(), plot_age_resids_boxes_mcmc(), plot_age_resids_mcmc(), plot_age_resids_mpd()

pbs-assess/gfiscamutils documentation built on Oct. 24, 2024, 1:37 p.m.