plot_age_resids_boxes_mcmc: Plot MCMC age residuals for an iSCAM model

In pbs-assess/gfiscamutils: Provide functions for iSCAM models

Plot MCMC age residuals for an iSCAM model

Description

Plot MCMC age residuals for an iSCAM model

Usage

plot_age_resids_boxes_mcmc(
  model,
  gear = 1,
  type = c("age", "year", "birth_year"),
  probs = c(0.025, 0.5, 0.975),
  comp_color = "black",
  comp_point_size = 0.5,
  ci_type = c("both", "line", "ribbon"),
  ci_linetype = c("dotted", "solid", "dashed", "dotdash", "longdash", "twodash"),
  ci_color = "red",
  ci_alpha = 0.3,
  ylim = c(-3, 3),
  text_title_size = 12,
  text_title_inc_mdl_nm = FALSE,
  leg_loc = c(1, 1),
  angle_x_labels = FALSE
)

Arguments

model	An iscam model object (class mdl_cls)
gear	The number of the gear to plot
type	One of "age", "year", or "birth_year"
probs	Probability values to use in the plots
comp_color	Color for the age comp data lines and points
comp_point_size	Size of the age composition points
ci_type	One of "both" or "line", type of confidence interval
ci_linetype	See linetype in ggplot2. Only used if ci_type is "line" or "both"
ci_color	Color for the lines or ribbon for the credible intervals
ci_alpha	Opacity between 0 and 1 for the credible intervals ribbons. Only used if ci_type is "ribbon" or "both"
ylim	The y-axis limits (vector of 2)
text_title_size	Size of text for the axis titles
text_title_inc_mdl_nm	Logical. If TRUE, make the model name the main title and the gear the subtitle. If FALSE, do not show the model name, and make the gear the main title (if text_title_size is NULL, no title will be shown)
leg_loc	Legend location (vector of 2)
angle_x_labels	If TRUE put 45 degree angle on x-axis tick labels

Value

A ggplot2::ggplot() object

See Also

Other Age plotting functions: plot_age_fits_mcmc(), plot_age_fits_mpd(), plot_age_resids_mcmc(), plot_age_resids_mpd()

pbs-assess/gfiscamutils documentation built on Oct. 24, 2024, 1:37 p.m.