plot_index_mpd: Plot MPD index fits or residuals for iSCAM models
In pbs-assess/gfiscamutils: Provide functions for iSCAM models

plot_index_mpd

R Documentation

Plot MPD index fits or residuals for iSCAM models

Description

Plot MPD index fits or residuals for a single or group of models by gear

Usage

plot_index_mpd(
  models,
  type = c("fits", "resids"),
  surv_index,
  gear = NULL,
  start_year = 1995,
  end_year = 2021,
  append_base_txt = NULL,
  legend_title = "Models",
  palette = iscam_palette,
  base_color = "black",
  dodge = 0.3,
  index_line_width = 0.5,
  index_point_size = 2,
  index_color = "chocolate3",
  fit_line_width = 0.5,
  fit_point_size = 2,
  leg_loc = c(1, 1),
  angle_x_labels = FALSE
)

Arguments

`models`	A list of iscam model objects (class mdl_lst_cls)
`type`	Either 'fits' or 'resids' for model fits or residuals respectively
`surv_index`	The `survey_index` data frame which is `dat$survey_index` if `dat` is the output from the `gfdata::get_survey_index()` function
`gear`	A vector of gear numbers to show panels for. If `NULL`, all will be shown. If a gear number out of range is included, a lookup table with gear numbers and names will be shown
`start_year`	Year to start the plot
`end_year`	Year to end the plot
`append_base_txt`	A vector of strings to append to the model names for display on the plot legend or title
`legend_title`	Title for legend
`palette`	A palette value that is in RColorBrewer::brewer.pal.info
`base_color`	A color to prepend to the brewer colors which are set by `palette`. This is called `base_color` because it is likely to be a base model
`dodge`	Amount to offset multiple model points on x-axis (in years)
`index_line_width`	The index data error bar and connecting line width
`index_point_size`	The index data point size
`index_color`	The color used for the observed index lines and points
`fit_line_width`	The model fit error bar and connecting line width
`fit_point_size`	The model fit point size
`leg_loc`	A two-element vector describing the X-Y values between 0 and 1 to anchor the legend to. eg. c(1, 1) is the top right corner and c(0, 0) is the bottom left corner
`angle_x_labels`	If `TRUE` put 45 degree angle on x-axis tick labels

Other Time series plotting functions: plot_biomass_grid_mcmc(), plot_biomass_mcmc(), plot_biomass_mpd(), plot_biomass_proj_mcmc(), plot_catch_fit_mcmc(), plot_f_mcmc(), plot_index_mcmc(), plot_q_mcmc(), plot_rdevs_mcmc(), plot_recr_grid_mcmc(), plot_recr_mcmc(), plot_recr_mpd(), plot_ts_mcmc(), plot_vuln_mcmc()