plot_ref_points_dist_mcmc: Plot DFO-style reference point figure with horizontal...

In pbs-assess/gfiscamutils: Provide functions for iSCAM models

Plot DFO-style reference point figure with horizontal boxplots and zones bounded by B0 reference points

Description

Plot DFO-style reference point figure with horizontal boxplots and zones bounded by B0 reference points

Usage

plot_ref_points_dist_mcmc(
  model,
  biomass_col = "B2023",
  probs = c(0.025, 0.25, 0.5, 0.75, 0.975),
  proj_catch_vals = NULL,
  line_thickness = 0.75
)

Arguments

model	An iscam model object (class mdl_cls)
biomass_col	The column name that you want to shoe output for. This column will be divided by the SB0 value to get a depletion for the year in the name of the column
probs	Probability values to use in the plot
proj_catch_vals	The catch values to include in the plot. If NULL, include all values present in the list from the output (model$mcmccalcs$proj_sbt_quants). If non-null, is a vector of values of catch to filter the projection biomass table on. Only show those values in the plot
line_thickness	Thickness of reference point lines (vertical lines)

pbs-assess/gfiscamutils documentation built on Oct. 24, 2024, 1:37 p.m.