FSP_summary: Summary of status estimates

In pbs-assess/ggmse: Tools for Working with openMSE (Including DLMtool, MSEtool, and SAMtool)

Summary of status estimates

Description

A wrapper function that returns biomass and F estimates for a set of conditioned operating models to support reporting for the Fish Stocks Provisions.

Usage

FSP_summary(
  rcm,
  scenario = paste("Scenario", 1:length(rcm)),
  MPD = FALSE,
  LRP = 0.4,
  USR = 0.8,
  FUN = median,
  ref = rep(TRUE, length(rcm))
)

Arguments

rcm	A list containing RCModel objects.
scenario	A character vector of names corresponding to rcm.
MPD	Logical, whether to plot individual simulations (FALSE) or from the single fit (TRUE) in RCModel@mean_fit.
LRP	The fraction of BMSY for the limit reference point
USR	The fraction of BMSY for the upper stock reference
FUN	Function for summarizing results across simulations for each scenario, e.g., median or mean. Set to NULL to return values from all simulations.
ref	A logical vector to identify reference operating models for the summary statistics

Value

A data frame with:

• B0

• R0

• h

• M

• Bt (terminal year spawning biomass)

• Ft (terminal year fishing mortality)

• BMSY

• FMSY

• MSY

• LRP (absolute magnitude)

• USR (absolute magnitude)

• LRP_B0 (ratio of LRP to B0)

• USR_B0 (ratio of USR to B0)

• B_BMSY

• p_LRP (probability above the LRP)

• p_USR (probability above USR)

• p_BMSY (probability above BMSY)

• F_FMSY

• p_FMSY (probability below FMSY)

pbs-assess/ggmse documentation built on Nov. 21, 2023, 8:06 p.m.