plot_hcr: Plot Harvest control rules as pairs plots

In pbs-assess/herringutils: Provides Plotting, Table-making, and Utility Functions for the CSAS Herring Documents

Plot Harvest control rules as pairs plots

Description

Plot Harvest control rules as pairs plots

Usage

plot_hcr(
  hcr.lst,
  sbt.lst,
  sbo.lst,
  mp = "",
  region = "",
  probs = c(0.025, 0.975),
  depletion = TRUE,
  point.size = 0.3,
  point.alpha = 0.4,
  line.width = 0.5,
  show.medians = TRUE,
  show.means = TRUE,
  show.shaded = FALSE,
  show.x.axes = TRUE,
  axis.text.size = 7,
  panel.text.size = 3
)

Arguments

hcr.lst	A list of length equal to the length of the sbt list, of vectors of length two, containing the catch limit (tac) and associated harvest rate (hr)
sbt.lst	a list of vectors of timeseries biomass values (typically many posteriors)
sbo.lst	a list of vectors of timeseries unfish biomass values (typically many posteriors)
mp	name of the management procedure to appear on the blank panel
region	name for the region to appear on the blank panel
probs	vector of length 2 for credible interval of median
depletion	if TRUE, show depletion (SB_t/SB_0); if FALSE show SB_t
point.size	size of points
point.alpha	transparency of points
line.width	width ot thickness of all lines
show.medians	show the median lines and credible intervals
show.means	show the mean lines
show.x.axes	if TRUE, axes labels, tick marks and tick labels will be shown on the lower plot's x axes
axis.text.size	size of text for axis labels
panel.text.size	text size for the description panels

Value

a ggplot object

pbs-assess/herringutils documentation built on Jan. 10, 2025, 8:43 a.m.