Files in pbs-assess/hookCompetition
An R package for estimating relative abundance indices from longline data using a censored likelihood approach

.Rbuildignore

.gitignore

Case Study/Case_Study_100_PercentChange.pdf Case Study/Case_Study_100_PercentChange_Q85.pdf Case Study/Case_Study_85_PercentChange.pdf Case Study/Case_Study_95_PercentChange.pdf Case Study/Case_Study_Comparison_Plot.pdf Case Study/Case_Study_Comparison_Plot_Q85.pdf Case Study/Case_Study_EffSkate_Plots.pdf

Case Study/Case_Study_Models.rds

Case Study/Case_Study_PropSat_Plots.pdf Case Study/Case_Study_Rel_Abund_100.pdf Case Study/Case_Study_Rel_Abund_100_Q85.pdf Case Study/Case_Study_Rel_Abund_85.pdf Case Study/Case_Study_Rel_Abund_95.pdf Case Study/Case_Study_Rel_Abund_Plots.pdf Case Study/Case_Study_Rel_Abund_Plots_Q85.pdf

Case Study/Hires_BC_Coastline.rds

Case Study/IPHC_Fishing_Stations.pdf Case Study/Paper_Case_Study.R Case Study/Paper_Case_Study_INLA.R Case Study/Paper_Case_Study_sdmTMB_AR1.R Case Study/Region_Plotter.R

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

R/Coast_Simp.R R/Coastline.R R/HT.prior.R R/bootstrap_index_fun.R R/bootstrap_index_fun_run.R R/censored_index_fun.R R/censored_index_fun_sdmTMB.R R/hookCompetition.R R/hook_with_bait.R R/make_spatial_objects.R R/mesh.R R/misc_functions.R R/read_Data_hookcomp.R R/sets_other_years.R R/spatio_temporal_plot_fun.R R/spatiotemp_censored_index_fun.R R/spatiotemp_censored_index_fun_sdmTMB.R R/survey_boundaries.R R/vignettes_precompiled_data.R R/yelloweye_rockfish.R README.md

Shapefiles/Coast_Midres/Coastline_Medres.cpg

Shapefiles/Coast_Midres/Coastline_Medres.dbf

Shapefiles/Coast_Midres/Coastline_Medres.prj

Shapefiles/Coast_Midres/Coastline_Medres.qpj

Shapefiles/Coast_Midres/Coastline_Medres.shp

Shapefiles/Coast_Midres/Coastline_Medres.shx

Shapefiles/Simplified_Coast/Simplified_Coast.cpg

Shapefiles/Simplified_Coast/Simplified_Coast.dbf

Shapefiles/Simplified_Coast/Simplified_Coast.prj

Shapefiles/Simplified_Coast/Simplified_Coast.qpj

Shapefiles/Simplified_Coast/Simplified_Coast.shp

Shapefiles/Simplified_Coast/Simplified_Coast.shx

Shapefiles/survey_boundaries.rda

Simulation Study/RDS_Files/Simulation_Results_Corrected.rds

Simulation Study/RDS_Files/Simulation_Results_Corrected_Self_Censoring.rds

Simulation Study/RDS_Files/Simulation_Results_Corrected_cen50.rds

Simulation Study/RDS_Files/Simulation_Results_Correlated_Corrected_2.rds

Simulation Study/RDS_Files/Simulation_Results_Correlated_Corrected_Aggressive.rds

Simulation Study/RDS_Files/Simulation_Study_Breakdown_Test.rds

data-raw/DATASET.R

data/Coast_simp.rda

data/Coastline.rda

data/hook_with_bait.rda

data/mesh.rda

data/sets_other_years.rda

data/survey_boundaries.rda

data/vignettes_precompiled_data.rda

data/yelloweye_rockfish.rda

hookcompetition.Rproj

man/Coast_simp.Rd man/Coastline.Rd man/HT.prior.Rd man/bootstrap_index_fun_run.Rd man/censored_index_fun.Rd man/censored_index_fun_sdmTMB.Rd man/hookCompetition.Rd man/hook_with_bait.Rd man/make_spatial_objects.Rd man/mesh.Rd man/read_Data_hookcomp.Rd man/sets_other_years.Rd man/spatio_temporal_plot_fun.Rd man/spatiotemp_censored_index_fun.Rd man/spatiotemp_censored_index_fun_sdmTMB.Rd man/survey_boundaries.Rd man/vignettes_precompiled_data.Rd man/yelloweye_rockfish.Rd

pacific_herring_predators_ind.rds

vignettes/.gitignore

vignettes/Case_Study_Analysis.Rmd vignettes/Example.Rmd

pbs-assess/hookCompetition documentation built on April 27, 2023, 12:47 p.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

pbs-assess/hookCompetition
An R package for estimating relative abundance indices from longline data using a censored likelihood approach

Files in pbs-assess/hookCompetition
An R package for estimating relative abundance indices from longline data using a censored likelihood approach

R Package Documentation

Browse R Packages

We want your feedback!

pbs-assess/hookCompetition An R package for estimating relative abundance indices from longline data using a censored likelihood approach

Files in pbs-assess/hookCompetition An R package for estimating relative abundance indices from longline data using a censored likelihood approach

R Package Documentation

Browse R Packages

We want your feedback!

pbs-assess/hookCompetition
An R package for estimating relative abundance indices from longline data using a censored likelihood approach

Files in pbs-assess/hookCompetition
An R package for estimating relative abundance indices from longline data using a censored likelihood approach