Man pages for pbs-assess/hookCompetition
An R package for estimating relative abundance indices from longline data using a censored likelihood approach
| bootstrap_index_fun_run | Computes Regional and Coastwide Bootstrapped Relative... |
| censored_index_fun | Compute Poisson-lognormal model-based indices of relative... |
| censored_index_fun_sdmTMB | Compute Poisson-lognormal model-based indices of relative... |
| Coastline | 400m - resolution coastline of BC, Canada used for plotting... |
| Coast_simp | Simplifed Coastline of BC, Canada used for building mesh in... |
| hookCompetition | hookCompetition: A package for computing censored-Poisson... |
| hook_with_bait | IPHC data on hooks returned with bait obtained from gfiphc... |
| HT.prior | The half t7 prior useful for the standard deviation of random... |
| make_spatial_objects | load the R objects required for fitting spatio-temporal... |
| mesh | An example triangulation mesh of the coastline of BC, Canada... |
| read_Data_hookcomp | Loads the IPHC catch count data for a species. It returns a... |
| sets_other_years | IPHC data on the survey sets in years 2003 onwards excluding... |
| spatiotemp_censored_index_fun | Fit spatio-temporal indices using the GMRF-SPDE approximation... |
| spatiotemp_censored_index_fun_sdmTMB | Compute Spatio-temporal Poisson-lognormal model-based indices... |
| spatio_temporal_plot_fun | Fit spatio-temporal indices using the GMRF-SPDE approximation... |
| survey_boundaries | SpatialPolygonsDataFrame object containing 4 survey... |
| vignettes_precompiled_data | Precomputed spatio-temporal model fits for the vignettes.... |
| yelloweye_rockfish | list containing IPHC catch counts of yelloweye rockfish.... |
