This package provides a set of tools for interacting with FOBI (Food-Biomarker Ontology). A collection of basic manipulation tools for biological significance analysis, graph visualization and text mining strategies for annotating nutritional data are provided here:
fobitools also offers a Shiny app version called
application implements most of
fobitools functions in an user-friendly
web interface and it is available at
To install Bioconductor version use:
# install.packages("BiocManager") BiocManager::install("fobitools")
If you need the GitHub version (not recommended unless you know what you are doing), use:
# install.packages("devtools") devtools::install_github("pcastellanoescuder/fobitools")
Pol Castellano-Escuder, Raúl González-Domínguez, David S Wishart, Cristina Andrés-Lacueva, Alex Sánchez-Pla, FOBI: an ontology to represent food intake data and associate it with metabolomic data, Database, Volume 2020, 2020, baaa033. DOI: https://doi.org/10.1093/databa/baaa033
Please note that the ‘fobitools’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
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