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Status Bioc release
status Bioc devel
status Codecov test
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Commit License: GPL
v3 DOI

This package provides a set of tools for interacting with FOBI (Food-Biomarker Ontology). A collection of basic manipulation tools for biological significance analysis, graph visualization and text mining strategies for annotating nutritional data are provided here:

fobitools also offers a Shiny app version called fobitoolsGUI. This application implements most of fobitools functions in an user-friendly web interface and it is available at


To install Bioconductor version use:

# install.packages("BiocManager")

If you need the GitHub version (not recommended unless you know what you are doing), use:

# install.packages("devtools")


Pol Castellano-Escuder, Raúl González-Domínguez, David S Wishart, Cristina Andrés-Lacueva, Alex Sánchez-Pla, FOBI: an ontology to represent food intake data and associate it with metabolomic data, Database, Volume 2020, 2020, baaa033. DOI:

Code of Conduct

Please note that the ‘fobitools’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

pcastellanoescuder/FOBIEnrichR documentation built on Feb. 20, 2024, 11:14 p.m.