Man pages for pcastellanoescuder/POMA_package
Tools for Omics Data Analysis
| box_cox_transformation | Box-Cox Transformation |
| cor_pmat | Correlation P-Values |
| detect_decimals | Detect decimals |
| flattenCorrMatrix | Flatten Correlation Matrix |
| pipe | Pipe operator |
| PomaBatch | Batch Correction |
| PomaBoxplots | Boxplots and Violin Plots |
| PomaClust | Cluster Analysis |
| PomaCorr | Correlation Analysis |
| PomaCreateObject | Create a 'SummarizedExperiment' Object |
| PomaDensity | Density Plots |
| PomaDESeq | Differential Expression Analysis Based on the Negative... |
| PomaEnrichment | Enrichment Analysis |
| PomaHeatmap | Heatmap Plot |
| PomaImpute | Impute Missing Values |
| PomaLasso | Lasso, Ridge, and Elasticnet Regularized Generalized Linear... |
| PomaLimma | Differential Expression Analysis Using 'limma' |
| PomaLM | Linear Models |
| PomaLMM | Linear Mixed Models |
| PomaNorm | Normalize Data |
| PomaOddsRatio | Logistic Regression Model Odds Ratios |
| PomaOutliers | Analyse and Remove Statistical Outliers |
| poma_pal_c | Return function to interpolate a continuous POMA color... |
| poma_pal_d | Return function to interpolate a discrete POMA color palette |
| PomaPCA | Principal Components Analysis |
| PomaPCR | Principal Components Regression |
| PomaPLS | Partial Least Squares Methods |
| PomaRandForest | Classification Random Forest |
| PomaRankProd | Rank Product/Rank Sum Analysis |
| PomaUMAP | Dimensionality Reduction with UMAP |
| PomaUnivariate | Univariate Statistical Test |
| PomaVolcano | Volcano Plot |
| quantile_norm | Sample Quantile Normalization |
| scale_color_poma_c | Color scale constructor for continuous 'viridis' "plasma"... |
| scale_color_poma_d | Color scale constructor for discrete 'viridis' "plasma"... |
| scale_fill_poma_c | Fill scale constructor for continuous 'viridis' "plasma"... |
| scale_fill_poma_d | Fill scale constructor for discrete 'viridis' "plasma"... |
| st000284 | Colorectal Cancer Detection Using Targeted Serum Metabolic... |
| st000336 | Targeted LC/MS of urine from boys with DMD and controls |
| sum_norm | Sample Sum Normalization |
| theme_poma | A ggplot theme which allow custom yet consistent styling of... |
