This function takes a vector of GEO study IDs, selects those with only one platform and those with samples within a given range. It then uses the collapse_rows function to collapse probes, and finally writes the expression and annotation data to files in the given directory.
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gse_ids |
A character vector containing GEO study accession IDs |
min_samples |
The minimum number of samples for studies (inclusive) |
max_samples |
The maximum number of samples for studies (inclusive) |
directory |
The directory to save files |
force |
If TRUE, overwrites the given directory. |
force_repeat |
If FALSE, avoids downloading study data already present in the 'directory' folder (as informed by folder names). |
get_expr |
If TRUE, get expression data. |
get_annot |
If TRUE, get annotation data. |
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