Man pages for pensoft/ropenbio
R Package of the Open Biodiveristy Knowledge Management System
| abstract | Abstract Constructor |
| Abstract | Abstract: uri:... |
| Address | To specify the components of the delivery address for the... |
| alt_label | SKOS Alternative Label |
| AnonRDF | Create a list of RDF statements that all share the same blank... |
| Article | an article in a science journal |
| as.data.frame.plazi_feed | Plazi Feed to Dataframe Converter |
| author | Author constructor |
| BibResource | an article in a science journal |
| binomialize | Binomialize Taxonomic Name |
| bold | datacite bold |
| bold_genbank_serializer | Serialization of BOLD record ids/BINS/Genbank ids in... |
| bold_processor | DEPRECATED |
| bold_string_cleaner | DEPRECATED |
| boldsystems | datacite boldsystems |
| bold_xml_modifier | DEPRECATED |
| check_download_status | Check Download Status of Plazi Treatment |
| checklist | Checklist Section Constructor |
| Checklist | Checklist |
| creator | Creator (Author) |
| crosslinker | DEPRECATED Crosslinker extracts external identifiers within... |
| dc_title | DC Elements Title |
| diagnosis | Diagnosis Section Constructor |
| Diagnosis | Diagnosis |
| discussion | Discussion Section Constructor |
| Discussion | Discussion |
| distribution | Distribution Section Constructor |
| Distribution | Distribution |
| dwc_authorship | Dwc Authorshiop |
| dwc_class | Dwc class |
| dwc_family | Dwc order |
| dwc_genus | Dwc genus |
| dwc_kingdom | Dwc Kingdom |
| dwc_order | Dwc order |
| dwc_phylum | Dwc Phylum |
| dwc_species_ep | Dwc genus |
| dwc_subgenus | Dwc genus |
| dwc_subspecies_ep | Dwc genus |
| eissn | e-Issn property |
| exact_match | SKOS exact match |
| ExpressionCollection | an article in a science journal |
| Figure | Figure: uri: <http://purl.org/spar/doco/Figure> comment: a... |
| find_atoms | Simpler version of find literals |
| find_literals | Finds the Atoms in a XML Node |
| frbr_part | e-Issn property |
| gbif_dataset | datacite gbif dataset |
| gbif_taxonomy_mapping | Maps ScNames from xmls to ScNames from GBIF |
| genbank | datacite genbank |
| GenBankAccession | GenBankAccession |
| genbank_processor | DEPRECATED |
| genbank_xml_modifier | DEPRECATED |
| generate_aria2c_input | Generate 'aria2c' Input |
| get_or_set_obkms_id | NOT USED ANYMORE Get the OBKMS Id of an XML node, if not set,... |
| get_scientific_name_or_tcl | Get the Label (Monimial, Bionomial, or Trinomial Name, or... |
| has_affiliation | Has Affiliation |
| has_content | Creator (Author) |
| has_doi | Has a DOI |
| has_email | Has email |
| has_issue | Has Issue |
| has_keyword | Has Keyword |
| has_publisher | Has a Publisher |
| has_publisher_id | Has a Publisher |
| has_scientific_name | Has Scientific Name |
| has_secundum_string | Secundum string |
| has_taxonomic_rank | Dwc Rank |
| has_taxonomic_rank_id | Dwc IRI Rank |
| has_taxonomic_status | Dwc Status |
| has_taxonomic_status_id | Dwc IRI Status |
| has_verbatim_rank | Dwc Verbatim Rank |
| has_zoobank | Has Zoobank |
| hello | Hello, World! |
| institutional_code | Institutional Code |
| InstitutionalCodeUsage | TNU |
| Introduction | Introduction: uri: http://purl.org/spar/deo/Introduction>... |
| introduction_section | Introduction Section Constructor |
| is.AnonRDF | Is the object an Anonymous Triples List (RDF)? |
| is_contained_by | Creator (Author) |
| is.error | Did you return an error? |
| is.ResourceDescriptionFramework | Is the object an Triples List (RDF)? |
| issn | Issn property |
| Journal | a science journal |
| keyword_group | Keyword Group Constructor |
| KeywordGroup | Keyword Group |
| MaterialsExamined | Distribution |
| mentions | mentions |
| mentionsHabitat | mentions habitat |
| node_extractor | Node Extractor |
| Nomenclature | Nomenclature the informational content of an article |
| NomenclatureCitation | Nom Citation the informational content of an article |
| NomenclatureCitationsList | Nom Citations the informational content of an article |
| orcid | datacite orcid |
| Organization | Organization |
| Paper | Paper the informational content of an article |
| params2string | Converts a List of Parameters to a URL GET String |
| parent_id | Get the Parent OBKS Id for an XML Node |
| pensoft_article_eloc | Pensoft Article E-Location |
| pensoft_images | Pensoft Links for Images of a Given Pensoft Paper |
| Person | Person |
| PersonalIdentifier | Personal Identifier |
| plazi | datacite plazi |
| plazi_feed | Plazi Feed Constructor |
| plazi_feed_schema | Plazi Feed |
| plazi_images | Retrieve Links for Images of a Given Treatment |
| plazi_int | Plazi Internal |
| pref_label | SKOS Preferred Label |
| processing_status | Find (Re-)Processing Status |
| publication_date | publication_date |
| Publisher | Publisher |
| qlookup_author1 | Looks up an author's ID by his or her email. |
| qlookup_by_label | Look Up Anything by Label |
| qlookup_by_label_in_context | Look Up Anything by Label In Context |
| qlookup_by_label_no_context | Look Up Anything by Label No Context |
| qlookup_by_sciname_no_context | Look Up by Scientific Name by Label No Context |
| qlookup_paper_id | Lookup Paper ID Query |
| qlookup_taxonomic_concept_id | Lookup the Taxonomic Concept of a Treatment |
| RdfLibBackend | RDF Class with 'rdflib' backend |
| realization | Realization Of |
| realization_of | Realization Of |
| regularize_taxonomic_names | Regularize Taxonomic Names in an XML Document (Generic) |
| regularize_taxonomic_names.taxonx | Regularize Plazi XML |
| regularize_taxonomic_names.taxpub | Regularize Taxonomic Names in an XML Document (TaxPub) |
| remove_all_tags | Strips all XML tags |
| remove_plazi_metadata | Remove Plazi Metadata from Taxonomic Names |
| remove_taxpub_markup | Remove TaxPub markup (Generic) |
| ResourceDescriptionFramework | Mutable RDF Object |
| ResourceIdentifier | Resource Identifier |
| Role | a role of agent in time |
| root | Get the Root (Article) OBKMS Id for an XML Node |
| ropenbio | ropenbio: R Package Accompanying the Open Biodiversity... |
| ScientificName | Scientific Name |
| set_obkms | NOT USED ANYMORE Set the OBKMS ID of an XML node according to... |
| standard_injector | Standard injector. Sets the id from the XPATH |
| Table | Table |
| table_formatter | DEPRECATED |
| TaxonomicConcept | Taxonomic Concept the informational content of an article |
| taxonomic_key | Taxonomic Key Section Constructor |
| TaxonomicKey | Distribution |
| TaxonomicNameUsage | TNU |
| title | Title Constructor |
| Title | Title: uri: <http://purl.org/spar/doco/Title> comment: the... |
| Treatment | Treatment Section |
| treatment_language | Get Plazi Treatment Language |
| underscore_taxonomic_names | Underscore Taxonimic Names in an XML Document Object |
| unescape_html | Unescpae HTML Characters |
| verbstat2openbiodiv | Converts a Verbatim Status to a Controlled Vocabulary |
| Work | a creative or scientific work |
| xml2nactem | Convert an XML File to Plain Text NaCTeM Format |
| xml2rdf | RDF-ization of a Single XML File |
| XmlSchema | XML Node Schema |
| zenodeo_fetch_ids | Fetches BLR Record Id's From Zenodo via Zenodeo |
| zenodo | datacite zenodo |
| zoobank | datacite zoobank |
