ripr: Repeat Induced Point mutations in R

#' @details
#' The ripr package provides functionality for calculating
#' repeat-induced point mutation (RIP) statistics from sequence data.
#' The package has function for reading repeatmasker output,
#' calculating RIP scores, and simple plotting functions for plotting
#' scores along chromosomes.
#'
#'
#'
#' @section Functions:
#'
#' readRepeatMaskerAlignment, readRepeatMaskerContent: load
#' repeatmasker results from alignment/annotation file
#'
#' calculateRIP: calculate RIP scores from repeatmasker results
#'
#' autoplot: plot AlignmentItem objects or GRanges objects with scores
#' along chromosomes
#'
#' @keywords internal
#'
"_PACKAGE"