meffonym.quantile.normalization: Quantile normalization to a standard
In perishky/meffonym: DNA methylation exposure and phenotypic archive
View source: R/quantile-normalization.r
meffonym.quantile.normalization R Documentation
Quantile normalization to a standard
Description
Methylation levels are quantile normalized
so that they are comparable to a given dataset.
Usage
meffonym.quantile.normalization(x, standard, ...)
Arguments
x
DNA methylation matrix (rows=CpG sites, columns=samples).
standard
A named vector of methylation levels corresponding to the row names of x.
Value
Matrix identical to x but with methylation levels
quantile normalized to the standard
and rows corresponding to standard.
Missing values in x are imputed by k-nearest neighbor.
perishky/meffonym documentation built on Nov. 8, 2024, 8:36 p.m.
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View source: R/quantile-normalization.r
| meffonym.quantile.normalization | R Documentation |
Quantile normalization to a standard
Description
Methylation levels are quantile normalized so that they are comparable to a given dataset.
Usage
meffonym.quantile.normalization(x, standard, ...)
Arguments
x |
DNA methylation matrix (rows=CpG sites, columns=samples). |
standard |
A named vector of methylation levels corresponding to the row names of |
Value
Matrix identical to x but with methylation levels
quantile normalized to the standard
and rows corresponding to standard.
Missing values in x are imputed by k-nearest neighbor.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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