import_txdb: Imports txdb data and converts it into format required for...

Description Usage Arguments Value Author(s) Examples

Description

This function imports txdb data and converts into a data frame used in the DominoEffect package only extracting the required information from the txdb object.

Usage

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  import_txdb(txdb_object)

Arguments

txdb_object

TxDB Object, e.g. from makeTxDbFromEnsembl

Value

Data frame that can be used in DominoEffect package.

Author(s)

Marija Buljan <[email protected]> Peter Blattmann <[email protected]>

Examples

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#EnsTxDB <- makeTxDbFromEnsembl(organism="Homo sapiens", release=73, 
#   circ_seqs=DEFAULT_CIRC_SEQS,server="ensembldb.ensembl.org")
#DominoData <- import_txdb(EnsTxDB)
#head(DominoData)

peterblattmann/DominoEffect documentation built on June 29, 2019, 10:41 a.m.