run_and_plot: Run and Plot Function

In peterkuriyama/hlsimulator_old: Simulate Hook and Line Survey

Description

High level wrapper function to run simulation and generate certain plots

Usage

run_and_plot(numrow = 10, numcol = 10, nfish = 1000, distribute,
  seed = 300, nyears = 15, location_list, random_locations = FALSE,
  nlocs = 10, move_func, nhooks, ndrops, scope = 0, pdf = FALSE,
  png = FALSE, make_plot = FALSE, ...)

Arguments

numrow	Number of rows in matrix
numcol	Number of columns in matrix
nfish	Number of fish to allocate among matrix
distribute	Specify fish distribution to be 'uniform', 'patchy', or 'area' specific
seed	Set seed if distribute == random, defaults to 300
move_func	input movement function name as text. Later parsed into function call
maxfish	Maximum number of fish that can be sampled at a time
percent	percentage of area to sample. Only necessary if distribute == 'patchy'
area	Specify area to distribute fish, options are 'upperleft', 'upperright', 'lowerleft', 'lowerright', 'upperhalf', 'lowerhalf', 'righthalf', 'lefthalf' Only necessary if distribute == 'area'

Examples

run_and_plot(numrow = 10, numcol = 10, nfish = 10000,
 distribute = 'uniform', seed = 300, nyears = 15, random_locations = TRUE, 
 nlocs = 10, move_func = 'move_fish_left', max_prob = .2, min_prob = .01)

 run_and_plot(numrow = 10, numcol = 10, nfish = 1000,
   distribute = 'uniform', seed = 300, nyears = 15, random_locations = TRUE, 
   nlocs = 10, move_func = 'move_fish_cw', move_prob = .8)

peterkuriyama/hlsimulator_old documentation built on May 25, 2019, 1:51 a.m.