R
infrastructure to run ms
simulations on gridsHere are some S4 classes and some methods for building up demographic models on spatial grids
that change over time,
along with methods to write these out as command-line parameters for ms
.
Have a look at the examples:
... and there's a bit more documentation, sort of in this document.
This should do it:
devtools::install_github("petrelharp/msarg")
Go to Hudson's site and download it. The proper citation for ms
is: "Hudson, R. R. (2002) Generating samples under a Wright-Fisher neutral model. Bioinformatics 18:337-8."
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