Man pages for petrikemppainen/LDna
Linkage disequilibrum network analysis (LDna)
| Concat_files | Combines data from files produced by 'LDnClusteringEL' |
| ELs | example edge lists for LDnClusteringEL |
| emmax_group | Modification of Emmax to be used for Genome Wide Association... |
| extractBranches | Extracts LD clusters for linkage disequilibrium network... |
| K | kinship matrix required for emmax example |
| LDna | Linkage disequilibrium network analyses (LDna) |
| LDnaRaw | Produces necessary data for LDna from a matrix of pairwise LD... |
| LDnClusteringEL | Linkage disequilibrium (LD) network clustering, starting from... |
| map_ara | _Arabidopsis thaliana_ map data (subset) |
| plotLDnetwork | Plots linkage disequilibrium networks |
| r2.baimaii_subs | Matrix of pairwise R^2 values |
| snp_ara | _Arabidopsis thaliana_ SNP data (subset) |
| summaryLDna | Summerises LD clusters |
| vcf | example vcf file for LDnClusteringVCF |
