Concat_files: Combines data from files produced by 'LDnClusteringEL'

In petrikemppainen/LDna: Linkage disequilibrum network analysis (LDna)

Combines data from files produced by LDnClusteringEL

Description

LDnClusteringEL produces one .rds file for each chromosome. This function concatenates the data from each .rds file into a single file

Usage

Concat_files(LDnCl_out)

Arguments

LDnCl_out

Path to folder containing output from LDnClusteringEL

Value

Returns concatenated file with the same data as in the individual .rds files. Can be used with e.g. emmax_group as with output produced by LDnClusteringEL

Author(s)

Petri Kemppainen [e-mail], zitong.li [e-mail]

References

Kemppainen, P., Knight, C. G., Sarma, D. K., Hlaing, T., Prakash, A., Maung Maung, Y. N., Walton, C. (2015). Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure. Molecular Ecology Resources, 15(5), 1031-1045. https://doi.org/10.1111/1755-0998.12369

Li, Z., Kemppainen, P., Rastas, P., Merila, J. Linkage disequilibrium clustering-based approach for association mapping with tightly linked genome-wide data. Accepted to Molecular Ecology Resources.

Examples

## Not run: 
LDnCL_combined <- Concat_files("path/to/rds/files")

## End(Not run)                   

petrikemppainen/LDna documentation built on April 14, 2024, 6:37 p.m.