bless_weitrix: Bless a SummarizedExperiment as a weitrix

In pfh/weitrix: Tools for matrices with precision weights, test and explore weighted or sparse data

Bless a SummarizedExperiment as a weitrix

Description

Set metadata entries in a SummarizedExperiment object so that it can be used as a weitrix.

Usage

bless_weitrix(object, x_name, weights_name)

Arguments

object	A SummarizedExperiment object.
x_name	Name of the assay containing the observations.
weights_name	Name of the assay containing the weights.

Value

A SummarizedExperiment object with metadata fields marking it as a weitrix.

Examples

mat <- matrix(c(1,2,NA,3,NA,4), ncol=2)
weights <- matrix(c(1,0.5,0,2,0,1), ncol=2)
se <- SummarizedExperiment(assays=list(foo=mat, bar=weights))

weitrix <- bless_weitrix(se, "foo", "bar")

metadata(weitrix)
weitrix_x(weitrix)
weitrix_weights(weitrix)

pfh/weitrix documentation built on Dec. 10, 2024, 5:56 p.m.