Files in pgpmartin/NanoBAC
Analysis of long read (Oxford Nanopore, PacBio) data from BAC or large plasmid sequencing
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NanoBAC.Rproj
R/AnnotateBACreads.R
R/FilterBACreads.R
R/SelectSingularBlastALN.R
R/TestArg.R
R/blaST2GR.R
R/checkBlastVar.R
R/consensusFromMSF.R
R/consmat2seq.R
R/estimateBACsizeFromVDV.R
R/findVDVjunctions.R
R/getDVDnames.R
R/getVDVnames.R
R/getVDnames.R
R/makeVarseq.R
R/paf2gr.R
R/readBlast.R
R/read_paf.R
R/selectVDVreads.R
R/splitDVDreads.R
README.Rmd
README.md
appveyor.yml
codecov.yml
inst/extdata/BAC02_5DVDreads.fa
inst/extdata/BAC02_5DVDreads.fa.fai
inst/extdata/BAC02_Blast18S.res
inst/extdata/BAC02_Blast25S.res
inst/extdata/BAC02_BlastVector.res
inst/extdata/BAC02_ReadClass.rds
inst/extdata/BAC02_ReadLength.tsv
inst/extdata/BAC02_mmap2Ecoli.paf
inst/extdata/VectorSequence.fa
inst/extdata/juncEx_vec_noisyread.res
inst/extdata/juncEx_vec_read.res
inst/extdata/varseq100.fa
inst/extdata/varseq100.msf
man/AnnotateBACreads.Rd
man/FilterBACreads.Rd
man/SelectSingularBlastALN.Rd
man/TestArg.Rd
man/blaST2GR.Rd
man/checkBlastVar.Rd
man/consensusFromMSF.Rd
man/consmat2seq.Rd
man/estimateBACsizeFromVDV.Rd
man/findVDVjunctions.Rd
man/getDVDnames.Rd
man/getVDVnames.Rd
man/getVDnames.Rd
man/makeVarseq.Rd
man/paf2gr.Rd
man/readBlast.Rd
man/read_paf.Rd
man/selectVDVreads.Rd
man/splitDVDreads.Rd
man/tidy_paf_tags.Rd
