readBlast: Read a blast result file (currently only for files created...
In pgpmartin/NanoBAC: Analysis of long read (Oxford Nanopore, PacBio) data from BAC or large plasmid sequencing
Description
Usage
Arguments
Value
Examples
Description
Read a blast result file
(currently only for files created using the blast parameter outfmt=6)
Usage
1
readBlast(blastpath, blastformat = "outfmt6")
Arguments
blastpath
character string. Path to a Blast result file
blastformat
format of the Blast result file (currently only the default outfmt=6 is supported)
Value
a tibble
Examples
1
2
3
4
## Example data set:
Path2Blast <- system.file("extdata", "BAC02_Blast18S.res", package = "NanoBAC")
## Import the data:
myblastResult <- readBlast(Path2Blast)
pgpmartin/NanoBAC documentation built on Dec. 11, 2020, 9:51 a.m.
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Description Usage Arguments Value Examples
Description
Read a blast result file (currently only for files created using the blast parameter outfmt=6)
Usage
1 | readBlast(blastpath, blastformat = "outfmt6")
|
Arguments
blastpath |
character string. Path to a Blast result file |
blastformat |
format of the Blast result file (currently only the default outfmt=6 is supported) |
Value
a tibble
Examples
1 2 3 4 | ## Example data set:
Path2Blast <- system.file("extdata", "BAC02_Blast18S.res", package = "NanoBAC")
## Import the data:
myblastResult <- readBlast(Path2Blast)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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