getLQ: Get precomputed matrix for fast NPA computations

Description Usage Arguments Value Examples

View source: R/getLQ.R

Description

Get precomputed matrix for fast NPA computations

Usage

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getLQ(Model, verbose = TRUE, pattern.gene = "^EXP\\(")

Arguments

Model

A R list object with slot model containing nodes and edges data.frame

verbose

A logical. Default is TRUE, messages will be displayed during the function execution

pattern.gene

A character vector. Regular expression for filtering downstrean genes

Value

A R list object with computed metric like L2, L3 matrices, Qbackbone, ...

Examples

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data(Hs__CFA__Apoptosis__0__0__1)
# Hs__CFA__Apoptosis__0__0__1 <- getLQ(
#    Hs__CFA__Apoptosis__0__0__1, verbose = TRUE)

philipmorrisintl/NPAModels documentation built on Feb. 11, 2021, 4:22 p.m.