README.md

In philipphoman/sci: Striatal Connectivity Index

Striatal connectivity index (SCI)

Author

Philipp Homan

Based on scripts by Miklos Argyelan.

The original algorithm was first described in the following paper: Sarpal DK, Argyelan M, Robinson DG, Szeszko PR, Karlsgodt KH, John M, Weissman N, Gallego JA, Kane JM, Lencz T, Malhotra AK. Baseline Striatal Functional Connectivity as a Predictor of Response to Antipsychotic Drug Treatment. Am J Psychiatry. 2016. 173(1):69-77.

Getting Started

This repository contains all the functions to calculate the striatal connectivity index (SCI) as described in Sarpal et al. (2016, Am J Psychiatry). It needs AFNI to run.

Installing

Clone the repository or download the zip file.

Built With

Ubuntu 17.04 on emacs 25.1.1 and org-mode 9.1.9.

Session info

R version 3.3.2 (2016-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 17.04

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

philipphoman/sci documentation built on May 23, 2019, 8:56 a.m.