README.md

In philippmuench/OligoMMR:

OligoMMR

R library for OligoMM data analysis

Installation

library(devtools)
devtools::install_github("philippmuench/OligoMMR")

Datasets

This packages provides preprocessed datasets from the Muench et al. 2021 study (Evolution of OligoMM microbiota during antibiotic treatment). To list available datasets please use

library(OligoMMR)
data()

Analyses

This R packages functions as the start point for the data analysis steps presented in Muench et al. 2021 study.

• Google Colab of Fig. 2 (AF profile of WGS samples)
• Google Colab of Fig. 5 (AF profile of genomic isolates)

philippmuench/OligoMMR documentation built on April 15, 2022, 10:32 a.m.