makeHumann2Barplot: makeHumann2Barplot

In philippmuench/PMtools: Miscellaneous helper functions

Description

Generates barplots statified by taxon and metadata

Usage

makeHumann2Barplot(
  dat,
  last.plot.colors,
  scale = "proportional-log",
  use.random.colors = T,
  hide.legend = T,
  space = "fixed",
  show.all.taxa = T,
  fixed.floor = NULL,
  fixed.ymax = NULL,
  sample.threshold = 10,
  hide.strata.legend = F
)

Arguments

dat	table holding preprocessed humann2 information using 'humann2Barplot'
last.plot.colors	dataframe of plot colors
scale	how to scale the height of bars, on default proportional-log
use.random.colors	use randomcoloR instead of RColorBrewer
hide.legend	boolean information if ledgend should be included
space	free or fixed (x scale)
show.all.taxa	boolean
fixed.floor	set ymin to a fixed value to prevent focus on minor bugs
fixed.ymax	set xmax to a fixed value keep y axis on multiple plots comparable
sample.threshold	minimum number of samples per strata required for plotting
hide.strata.legend	hide color legend

philippmuench/PMtools documentation built on Dec. 27, 2019, 8:08 a.m.