Man pages for philliplab/tsic
Time since infection calculator
| all_assay_dynamics | Window Period Distributions for Assays |
| check_assay_order | Check that assays are ordered by window period |
| check_lb_med_ub | Basic function used for testing estimate_lb_med_ub |
| combine_sc_and_visit_times | Produce ihist from sc and visit times |
| compute_daily_grid | Computes probability that infection was on each of a range of... |
| compute_result_summary | Computes a summary of the results of a single assay for an... |
| construct_aggregate_interpreter | Constructs an interpreter for a diagnostic history |
| construct_assay_result_interpreter | Construct an assay result interpretation function |
| estimate_lb_med_ub | Estimates the 2.5, 50 and 97.5 percentiles and much more |
| fit_weibull3 | Fits a 3 parameter Weibull distribution to percentiles |
| get_assay_dynamics | Get dynamics functions for an assay |
| get_scatterpoints | Evaluates a function over a range |
| interpret_ihist | Interprets an ihist into daily likelihoods |
| linear_assay_dynamics | Linear Assay Dynamics |
| load_dsmb_nov_2019_data | Loads dataset used for DSMB Nov 2019 |
| parse_data_first_mock | Parse and prepare the data for the first mock dataset |
| plot_iihist | Plots an individual history |
| recognize_scenario | Recognize a scenario from an ihist |
| reduce_x_points | Reduce the number of scatter points |
| remove_strongly_dependent_results | Removes strongly dependent results at the same timepoint |
| select_most_informative_results | Selects most informative test results only |
| sim_dx_results | Simulates a visit's diagnostic results |
| sim_sc_times | Simulate time to seroconversion |
| step_assay_dynamics | Step Assay Dynamics |
| trim_range | Trims range on which to evaluate a function |
| visit_labeller | Annotates an ihist with visit_numbers and rel_sample_dates |
| weib3_assay_dynamics | Weibull3 Assay Dynamics |
