interpret_ihist: Interprets an ihist into daily likelihoods

In philliplab/tsic: Time since infection calculator

Description

Given a range of interest and an individual's diagnostic history, compute the likelihood that each day in the range was the day of infection. This produces the output in long format.

Usage

interpret_ihist(ihist, range_start, range_end, verbose = FALSE)

Arguments

ihist	The diagnostic history for an individual.
range_start	The earliest day of interest.
range_end	The latest day of interest.
verbose	Should verbose output be printed during the computation?

Examples

ihist <- data.frame(
  ptid = c('p0', 'p0'),
  sample_date = c('2016-03-01', '2016-09-01'),
  test = c('step_unit_testing', 'step_unit_testing'),
  result = c('-', '+'),
  stringsAsFactors = FALSE
)
range_start <- as.Date('2016-01-01')
range_end <- as.Date('2016-12-01')
interpret_ihist(ihist = ihist, range_start = range_start, range_end = range_end, verbose = TRUE)

philliplab/tsic documentation built on June 26, 2020, 7:55 p.m.