API for philpatton/cowbird
Recreate analysis in Patton et al (TBD)
| Global functions | |
|---|---|
| add_covariate | Man page Source code |
| add_model | Man page Source code |
| add_parm | Man page Source code |
| add_species | Man page Source code |
| bundle_mcmc_samples | Man page Source code |
| calc_elppd | Man page Source code |
| calc_likelihood_cowbird | Man page Source code |
| calc_likelihood_host | Man page Source code |
| calc_naive_state_cowbird | Man page Source code |
| calc_naive_state_host | Man page Source code |
| calc_pdwaic | Man page Source code |
| calc_site_likelihood | Man page Source code |
| calc_waic | Man page Source code |
| check_all_models | Man page Source code |
| check_model | Man page Source code |
| cooccur_probs | Man page Source code |
| cowbird_data | Man page |
| effective_sample_size | Man page Source code |
| evaluate_all_models | Man page Source code |
| evaluate_model | Man page Source code |
| extract_coda_samples | Man page Source code |
| fit_all_models | Man page Source code |
| fit_model | Man page Source code |
| gelman_rubin | Man page Source code |
| get_all_parameters | Man page Source code |
| get_checking_parameters | Man page Source code |
| get_evaluation_parameters | Man page Source code |
| get_habitat_names | Man page Source code |
| get_host_full_name | Man page Source code |
| get_host_names | Man page Source code |
| get_hyper_parameters | Man page Source code |
| get_mcmc_ci | Man page Source code |
| get_mcmc_mean | Man page Source code |
| get_o | Man page Source code |
| get_predicition_parameters | Man page Source code |
| get_table1_parameters | Man page Source code |
| get_table2_parameters | Man page Source code |
| get_table3_parameters | Man page Source code |
| get_v | Man page Source code |
| get_w | Man page Source code |
| get_x | Man page Source code |
| get_y | Man page Source code |
| initialize_values | Man page Source code |
| is_detected | Man page Source code |
| just_host | Man page Source code |
| make_annotation_df | Man page Source code Source code |
| make_data_list | Man page Source code |
| make_figure_five | Man page Source code |
| make_figure_four | Man page Source code |
| make_figure_three | Man page Source code |
| make_figure_two | Man page |
| make_table | Man page Source code |
| make_table_one | Man page Source code |
| make_table_three | Man page Source code |
| make_table_two | Man page Source code |
| multispecies_naive_state | Man page Source code |
| order_col | Source code |
| order_row | Source code |
| plot_ppc_individual | Man page Source code Source code |
| ppc_table | Man page Source code |
| rename_col | Source code |
| save_figure_five | Man page Source code |
| save_figure_four | Man page Source code |
| save_figure_three | Man page |
| save_ppc | Man page |
| select_last | Source code |
| sites_with_both | Man page Source code |
| sites_with_both_observed | Man page Source code |
| sites_with_both_predicted | Man page Source code |
| summarize_mcmc | Man page Source code |
| summarize_mcmc_samples | Source code |
