fit_all_models: Fit every cowbird-host co-occurrence model

In philpatton/cowbird: Recreate analysis in Patton et al (TBD)

Fit every cowbird-host co-occurrence model

Description

This function is a wrapper for the fit_model function, which is used to fit the individual models in the paper.

Usage

fit_all_models(
  data_list,
  params_to_monitor = NULL,
  n.chains = 1,
  n.adapt = 100,
  n.burn = 10,
  n.iter = 10,
  n.thin = 1,
  mcmc_params_paper = FALSE,
  fix_seed = FALSE
)

Arguments

data_list	list of data from make_data_list()
params_to_monitor	character vector indicating which parameters should be saved from the MCMC samples
n.chains	integer representing the number of MCMC chains to run
n.adapt	integer representing the number of MCMC iterations to adapt the sampler
n.burn	integer representing the number of MCMC iterations to discard before saving samples
n.iter	integer representing the number of MCMC iterations to save
n.thin	integer representing the number of MCMC iterations to thin
mcmc_params_paper	logical. should we fit the model using the MCMC parameters described in the paper?
fix_seed	logical. should the seed be set for reproducible results?

Value

list, elements of class rjags::mcarray

See Also

rjags documentation for fitting models with rjags

philpatton/cowbird documentation built on March 2, 2023, 3:05 a.m.