utils_plot: Utility plotting functions

In phytomosaic/vuln: Niche-based Vulnerability of Species and Communities

Description

Utility functions for plotting conceptual figures.

Usage

make_d(x, ...)

plot_d(d, plotd = FALSE, ...)

txt_tau(e, tau = 0.95, ht, i, ...)

txt_val(e1, e2, e3, xval = 18.5, ht, ...)

set_par(panels = 1, ...)

add_text(x, y, labels, bold = FALSE, ...)

colvec(x, n = 99, alpha = 0.6, begin = 0.2, end = 0.9, dir = 1,
  pal, ...)

surfcol(x, ngrid, alpha = 0.6, begin = 0.2, end = 0.9, dir = 1,
  pal, ...)

plot_loess(x, y, col = "#00000040", lcol = "#FF0000BF", cex = 0.8,
  pch = 16, las = 1, bty = "L", ...)

Arguments

x	vector of climate values at which a species occurs.
...	further arguments passed to other functions.
d	density object.
plotd	logical, plot the density as polygon?
e	ECDF object.
tau	specified quantile level.
ht	height of text label in relative coordinates.
i	character, text in subscript.
e1, e2, e3	three ECDF objects.
xval	specified x value to return quantile values.
panels	number of figure panels in 'set_par'.
y	numeric, relative vertical position of text in 'add_text'.
labels	character vector of text to plot in 'add_text'.
bold	logical, should panel label be bold in 'add_text'?
n	number of unique colors to be used in the palette.
alpha	alpha transparency in [0,1].
begin	hue in [0,1] at which the viridis colormap begins.
end	hue in [0,1] at which the viridis colormap ends.
dir	order of colors in the viridis colormap scale; if 1, the default, colors are ordered from darkest to lightest; if -1, then reversed.
pal	optional specification for a color palette; defaults to viridis::inferno palette if missing.
ngrid	number of grid cells in the matrix of values plotted in 'persp'.
col, lcol, cex, pch, las, bty	graphical parameters following par and plot.

Details

Lightweight functions to plot conceptual figures.

Value

See below.

phytomosaic/vuln documentation built on Sept. 21, 2019, 8:23 a.m.