tests/testthat/_snaps/check_hospitalizations.md

In piavat/PRE2DUP-R: Package for PRE2DUP-R method

check_hospitalizations detects missing arguments

Code
  check_hospitalizations(hospital_data, date_range = c("2026-01-01", "2024-02-01"))
Condition
  Error:
  ! arguments 'hosp_person_id', 'hosp_admission', 'hosp_discharge' are missing from function call.

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID")
Condition
  Error:
  ! arguments 'hosp_admission', 'hosp_discharge' are missing from function call.

Code
  check_hospitalizations(hospital_data, hosp_admission = "Entry", hosp_discharge = "Leave",
    date_range = c("2026-01-01", "2024-02-01"))
Condition
  Error:
  ! argument 'hosp_person_id' is missing from function call.

check_hospitalizations detects missing data columns

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave")
Condition
  Error:
  ! column 'Entry' is missing from the dataset.

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave")
Condition
  Error:
  ! columns 'Entry', 'Leave' are missing from the dataset.

check_hospitalizations detects errorneus date ranges

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave", date_range = c("2026-01-01", "2024-02-01"))
Condition
  Error:
  ! starting date must be before ending date in date range.

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave", date_range = c(""))
Condition
  Error:
  ! two valid dates required for date range.

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave", date_range = c("2026-01-01"))
Condition
  Error:
  ! two valid dates required for date range.

check_hospitalizations detects dates outside date ranges

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave", date_range = c("2020-01-01", "2024-02-01"))
Message
  Column 'Entry' has values outside date range in 1 rows: 1
  Column 'Leave' has values outside date range in 1 rows: 4
Condition
  Error:
  ! Errors in dataset assigned to 'hospital_data'. See listing above for details.

check_hospitalizations detects dates in wrong order

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave", date_range = c("2020-01-01", "2024-02-01"))
Message
  Column 'Entry' has admission date later or in a same date than discharge date in 1 rows: 3
Condition
  Error:
  ! Errors in dataset assigned to 'hospital_data'. See listing above for details.

check_hospitalizations detects overlapping hospitalizations

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave", date_range = c("2020-01-01", "2024-02-01"))
Message
  Checks passed for 'hospital_data'

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave")
Message
  Checks passed for 'hospital_data'
  Number of overlapping hospitalizations detected and and will be merged:  2

Code
  check_hospitalizations(test_data, hosp_person_id = "pid", hosp_admission = "admission",
    hosp_discharge = "discharge")
Message
  Checks passed for 'test_data'
  Number of overlapping hospitalizations detected and and will be merged:  7

Code
  outdata <- check_hospitalizations(test_data, hosp_person_id = "pid",
    hosp_admission = "admission", hosp_discharge = "discharge", return_data = TRUE)
Message
  Checks passed for 'test_data'
  Number of overlapping hospitalizations detected and and will be merged:  7

check_hospitalizations reports error if the hospitalization data has not records

Code
  check_hospitalizations(hospital_data, hosp_person_id = "PID", hosp_admission = "Entry",
    hosp_discharge = "Leave")
Condition
  Error:
  ! No data in the dataset 'hospital_data'.

piavat/PRE2DUP-R documentation built on June 11, 2025, 11:42 a.m.