README.md

In pietrofranceschi/HomogenMSI: Calculate drug homogeneity value for MSI data

HomogenMSI

This package provides a reference implementation of our algorithm for drug homogeneity assessment in ion images extracted from MSI datasets.

Installation

• Depends on

spatstat

• Install devtools: in the R/R Studio shell type

install.packages("devtools")

• Install HomogenMSI: In the shell type

library(devtools)
install_github("pietrofranceschi/HomogenMSI", dependencies = TRUE) 

To additionally build the vignette the previous command should include build_vignettes = TRUE

library(devtools)
install_github("pietrofranceschi/HomogenMSI", dependencies = TRUE, build_vignettes = TRUE) 

• Load the package: In shell type

library(HomogenMSI)

Description

For the deails see the package vignette

Contact

email: Mridula Prasad ([e-mail])

pietrofranceschi/HomogenMSI documentation built on May 21, 2019, 9:22 a.m.