findDrClusters: Function looks for discordant reads with the same chromosome...
In piotrcirocki/BCTs-finder: BCTs-finder

Function looks for discordant reads with the same chromosome name, mate and direction in close distance and assigna them the same id.

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findDrClusters(configuredDf, tresholdValue, countBufferValue,
  numberOfPositionBases, numberOfMrnmBases, startIndex = NULL,
  endIndex = NULL, filteredChromomes = NULL)

`configuredDf`	gets dataframe result of function getConfiguration
`tresholdValue`	specifies how many similar elements should be in the sequence
`countBufferValue`	defines how many mismatched reads can be from another sequence to start ignore current sequence
`numberOfPositionBases`	defines the maximum length of sequence position from the first element in sequence
`numberOfMrnmBases`	defines the maximum length of sequence mrnm from the first element in sequence
`startIndex`	defines from which position start read configured dataframe
`endIndex`	defines to which position start read configured data from
`filteredChromomes`	defines character vector of given chromosomes