NEWS.md

In piyalkarum/rCNV: Detect Copy Number Variants from SNPs Data

rCNV 1.3.0 (third update)

• parallelization enabled
• dupValidate function revised
• per site Fis added to deviant detection
• vstPermutation function added
• maf modified to remove multi-allelic sites
• FIT correction added

rCNV 1.2.0 (second update)

• relatedness function optimized
• bugs fixed in cpm.normal function
• bugs fixed in the sig.het function
• new publication added
• web page updated

rCNV 1.1.0 (first update)

Changes

• sig.het function is 10x faster
• dupGet function categorizes SNPs into deviants and non-deviants not duplicates and singlets
• The new function cnv categorizes deviant SNPs to CNVs using the given statistical approaches or using unsupervised clustering
• minor issues of chi-square and Z-score calculations are fixed
• allele.info calculates excess of heterozygotes in addition to Z-score and chi-square values
• sig.hets function also accepts allele depth table for input
• new function added 'power.bias' to plot detection bias from simulations
• webpage updated to match the changes

rCNV 1.0.0 (Release date: 29/03/2022)

Changes

• All the major functions completed
• bugs fixed
• Website updated
• this is the first release of the package

piyalkarum/rCNV documentation built on April 17, 2025, 11:46 p.m.