In piyalkarum/rCNV: Detect Copy Number Variants from SNPs Data

knitr::opts_chunk$set(echo = TRUE)

cat("# rCNV <img src='man/figures/logo.png' align='right' height='139' />")

rCNV: An R package for detecting copy number variants from SNPs data

r rCNV:::colorize("Piyal Karunarathne, Qiujie Zhou, Klaus Schliep, and Pascal Milesi","dodgerblue")

rCNV was designed to identify duplicates (CNV) from SNPs data with ease.

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For a comprehensive tutorial on the package, go to https://piyalkarum.github.io/rCNV/ and navigate to “Get started” where all the functions and usage are explained with ample examples.

Installation

• CRAN link https://cran.r-project.org/package=rCNV

install.packages("rCNV")

• You can install the development version of rCNV from GitHub with:

    if (!requireNamespace("devtools", quietly = TRUE)) 
        install.packages("devtools") 
    devtools::install_github("piyalkarum/rCNV", build_vignettes = TRUE)

Please don’t forget to cite us if you use the package.

How to cite

• Karunarathne P, Zhou Q, Schliep K, Milesi P. A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: 'rCNV', a versatile r package for paralogue and CNV detection. Mol Ecol Resour. 2023 Jul 29. doi: 10.1111/1755-0998.13843

• Karunarathne, P., Zhou, Q., Schliep, K., & Milesi, P. (2022). A new framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile R package for paralogs and CNVs detection. BioRxiv, 2022.10.14.512217. doi: 10.1101/2022.10.14.512217

piyalkarum/rCNV documentation built on April 17, 2025, 11:46 p.m.