Readme.md
In pkhoueiry/fcScan: fcScan for detecting clusters of coordinates with user defined options
fcScan
fcScan is a Bioconductor package aiming at clustering genomic features based on a defined window size and combination of sites.
Dependencies
The below R packages are required for installation:
- stats
- plyr
- utils
- VariantAnnotation
- SummarizedExperiment
- rtracklayer
- GenomicRanges
- IRanges
- foreach
- doParallel
- parallel
Installation
- Git clone the project directory
git clone https://github.com/pkhoueiry/fcScan.git
- From the terminal run
R CMD build fcScan
- Run
R CMD check fcScan_1.7.4.tar.gz
- Run
R CMD BiocCheck fcScan_1.7.4.tar.gz
- Install package by
R CMD INSTALL fcScan_1.7.4.tar.gz
- Start R and load library using
library(fcScan)
pkhoueiry/fcScan documentation built on July 29, 2021, 1:15 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
fcScan
fcScan is a Bioconductor package aiming at clustering genomic features based on a defined window size and combination of sites.
Dependencies
The below R packages are required for installation:
- stats
- plyr
- utils
- VariantAnnotation
- SummarizedExperiment
- rtracklayer
- GenomicRanges
- IRanges
- foreach
- doParallel
- parallel
Installation
- Git clone the project directory
git clone https://github.com/pkhoueiry/fcScan.git - From the terminal run
R CMD build fcScan - Run
R CMD check fcScan_1.7.4.tar.gz - Run
R CMD BiocCheck fcScan_1.7.4.tar.gz - Install package by
R CMD INSTALL fcScan_1.7.4.tar.gz - Start R and load library using
library(fcScan)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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