ChebiEntry: ChEBI entry class.

In pkrog/biodbChebi: biodbChebi, a library for connecting to the ChEBI Database

ChEBI entry class.

Description

This is the entry class for ChEBI database.

Super classes

biodb::BiodbEntry -> biodb::BiodbXmlEntry -> ChebiEntry

Methods

Public methods

• ChebiEntry$clone()

Inherited methods

• biodb::BiodbEntry$appendFieldValue()

• biodb::BiodbEntry$cloneInstance()

• biodb::BiodbEntry$computeFields()

• biodb::BiodbEntry$fieldHasBasicClass()

• biodb::BiodbEntry$getBiodb()

• biodb::BiodbEntry$getDbClass()

• biodb::BiodbEntry$getField()

• biodb::BiodbEntry$getFieldCardinality()

• biodb::BiodbEntry$getFieldClass()

• biodb::BiodbEntry$getFieldDef()

• biodb::BiodbEntry$getFieldNames()

• biodb::BiodbEntry$getFieldValue()

• biodb::BiodbEntry$getFieldsAsDataframe()

• biodb::BiodbEntry$getFieldsAsJson()

• biodb::BiodbEntry$getFieldsByType()

• biodb::BiodbEntry$getId()

• biodb::BiodbEntry$getName()

• biodb::BiodbEntry$getParent()

• biodb::BiodbEntry$hasField()

• biodb::BiodbEntry$isNew()

• biodb::BiodbEntry$makesRefToEntry()

• biodb::BiodbEntry$parentIsAConnector()

• biodb::BiodbEntry$parseContent()

• biodb::BiodbEntry$print()

• biodb::BiodbEntry$removeField()

• biodb::BiodbEntry$setField()

• biodb::BiodbEntry$setFieldValue()

• biodb::BiodbXmlEntry$initialize()

---

Method clone()

The objects of this class are cloneable with this method.

Usage

ChebiEntry$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Create a connector to ChEBI
conn <- mybiodb$getFactory()$createConn('chebi')

# Get an entry
e <- conn$getEntry('15440')

# Terminate instance.
mybiodb$terminate()

pkrog/biodbChebi documentation built on March 29, 2022, 8:40 a.m.