An R Bioconductor package for accessing Lipidmaps. online database, based on Bioconductor package/framework biodb.
biodbLipidmaps is an extension package of the biodb package. It allows to connect to Lipidmaps for retrieving entries, and searching for entries using the LMSDSearch web service.
Getting a single entry:
mybiodb <- biodb::newInst()
conn <- mybiodb$getFactory()$createConn('lipidmaps.structure')
entries <- conn$getEntry('LMFA00000001')
Install the latest stable version using Bioconductor:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install('biodbLipidmaps')
See the introduction vignette:
vignette('biodbLipidmaps', package='biodbLipidmaps')
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