NciCactusEntry: biodbNci, a library for connecting to the National Cancer...

In pkrog/biodbNci: biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database

biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database. entry class.

Description

Entry class for biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database.

Super classes

biodb::BiodbEntry -> biodb::BiodbTxtEntry -> biodb::BiodbSdfEntry -> NciCactusEntry

Methods

Public methods

• NciCactusEntry$clone()

Inherited methods

• biodb::BiodbEntry$appendFieldValue()

• biodb::BiodbEntry$cloneInstance()

• biodb::BiodbEntry$computeFields()

• biodb::BiodbEntry$fieldHasBasicClass()

• biodb::BiodbEntry$getBiodb()

• biodb::BiodbEntry$getDbClass()

• biodb::BiodbEntry$getField()

• biodb::BiodbEntry$getFieldCardinality()

• biodb::BiodbEntry$getFieldClass()

• biodb::BiodbEntry$getFieldDef()

• biodb::BiodbEntry$getFieldNames()

• biodb::BiodbEntry$getFieldValue()

• biodb::BiodbEntry$getFieldsAsDataframe()

• biodb::BiodbEntry$getFieldsAsJson()

• biodb::BiodbEntry$getFieldsByType()

• biodb::BiodbEntry$getId()

• biodb::BiodbEntry$getName()

• biodb::BiodbEntry$getParent()

• biodb::BiodbEntry$hasField()

• biodb::BiodbEntry$isNew()

• biodb::BiodbEntry$makesRefToEntry()

• biodb::BiodbEntry$parentIsAConnector()

• biodb::BiodbEntry$parseContent()

• biodb::BiodbEntry$print()

• biodb::BiodbEntry$removeField()

• biodb::BiodbEntry$setField()

• biodb::BiodbEntry$setFieldValue()

• biodb::BiodbSdfEntry$initialize()

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Method clone()

The objects of this class are cloneable with this method.

Usage

NciCactusEntry$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

See Also

BiodbSdfEntry.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Get a connector that inherits from NciCactusConn:
conn <- mybiodb$getFactory()$createConn('nci.cactus')


# Use a database extract in order to avoid the downloading of the whole
# database.
dbExtract <- system.file("extdata", 'generated', "cactus_extract.txt.gz",
    package="biodbNci")
conn$setPropValSlot('urls', 'db.gz.url', dbExtract)

# Get an entry
e <- conn$getEntry('749674')

# Terminate instance.
mybiodb$terminate()

pkrog/biodbNci documentation built on March 27, 2022, 4:30 p.m.