Man pages for plbaldoni/ZIMHMM
Improved Detection of Epigenomic Marks With Mixed Effects HMMs
| controlPeaks | Control parameters for ZIMHMM and ZIHMM |
| createOffset | Create Offsets for Peak Calling |
| HMM | Hidden Markov Model (HMM) |
| Huvec | ChIP-seq read counts of H3K36me3 (and input control) from the... |
| makeBed | Create a BED file from an output of ZIMHMM |
| plotPeaks | Create a plot of ChIP read counts with called peaks and... |
| ZIHMM | Zero Inflated Fixed Effects Hidden Markov Model (ZIHMM) |
| ZIMHMM | Zero Inflated Mixed Effects Hidden Markov Model (ZIMHMM) |
